Algal Biodiversity as a Sentinel of Freshwater Ecosystem Health
DOI:
https://doi.org/10.67601/njbls.v3i2b.89Keywords:
Biomonitoring, Eutrophication, Harmful, Environmental DNA (eDNA), Remote sensingAbstract
Freshwater ecosystems are among the most biologically productive yet ecologically vulnerable habitats on Earth, facing escalating pressures from nutrient enrichment, climate change, industrial pollution, and expanding urbanization. Algae encompassing a phylogenetically diverse assemblage ranging from unicellular phytoplankton and benthic diatoms to filamentous green algae and colonial cyanobacteria serve simultaneously as foundational primary producers and sensitive environmental recorders. Their rapid, measurable responses to physicochemical perturbations make them unrivalled bioindicators for the integrated assessment of aquatic ecosystem integrity. This review synthesizes current knowledge on the taxonomy, structural diversity, ecological functions, and environmental sensitivity of freshwater algae, contextualized within a comprehensive framework for water quality monitoring. The principal drivers of algal community change including eutrophication, climate-induced thermal stratification, organic and metal pollution, and hydromorphological modifications was examined and discusses how shifts in assemblage composition, diversity indices, and functional traits reflect these stressors. A systematic evaluation of assessment methodologies is presented, and transformative emerging approaches including environmental DNA (eDNA) metabarcoding, satellite and drone-based remote sensing, and machine-learning-assisted predictive modeling are highlighted for their capacity to overcome the taxonomic, spatial, and temporal limitations of conventional morphology-based assessment. Special focus is directed to harmful algal blooms (HABs), particularly cyanobacterial blooms, and their compounding role as co-stressors alongside climate warming. The review concludes by identifying critical research gaps and advocating for the integration of molecular tools, standardized protocols, expanded genomic reference databases, and artificial intelligence into global algal biomonitoring frameworks.
References
Amorim, C. A., & Moura, A. N. (2020). Ecological impacts of freshwater algal blooms on water quality, plankton biodiversity, structure, and ecosystem functioning. Science of the Total Environment, 743, 143605. https://doi.org/10.1016/j.scitotenv.2020.143605
Bellinger, E. G., & Sigee, D. C. (2015). Freshwater algae: Identification and use as bioindicators (2nd ed.). John Wiley & Sons.
Bižić, M., Klintzsch, T., Ionescu, D., Hindiyeh, M. Y., Günthel, M., Muro-Pastor, A. M., Eckert, W., Urich, T., Keppler, F., & Grossart, H.-P. (2020). Aquatic and terrestrial cyanobacteria produce methane. Science Advances, 6(3), eaax5343. https://doi.org/10.1126/sciadv.aax5343
Bush, A., Compson, Z. G., Monk, W. A., Porter, T. M., Steeves, R., Emilson, C. E., & Baird, D. J. (2017). Studying ecosystems with DNA metabarcoding: Lessons from aquatic biomonitoring. Metabarcoding and Metagenomics, 1, e14025.
Chon, T.-S., Qu, X., Cho, W.-S., Hwang, H.-J., Tang, H., Liu, Y., Choi, J.-H., Jung, M., Chung, B. S., Lee, H. Y., Chung, Y. R., & Koh, S.-C. (2013). Evaluation of stream ecosystem health and species association based on multi-taxa (benthic macroinvertebrates, algae, and microorganisms) patterning with different levels of pollution. Ecological Informatics, 18, 73–83. https://doi.org/10.1016/j.ecoinf.2013.06.004
Crossetti, L. O., & Bicudo, C. E. M. (2008). Phytoplankton as a tool for water quality assessment in a shallow tropical urban reservoir, Garças Pond, São Paulo, Brazil. Hydrobiologia, 610(1), 161–173.
Dash, M. C., Panda, S., & Misra, B. N. (2021). Seasonal variation in algal diversity in freshwater ecosystems of Odisha. Aquatic Ecology Studies, 14(2), 101–109.
Díaz, S., Settele, J., Brondízio, E. S., Ngo, H. T., Agard, J., Arneth, A., & Zayas, C. N. (2019). Pervasive human-driven decline of life on Earth points to the need for transformative change. Science, 366(6471), eaax3100. https://doi.org/10.1126/science.aax3100
Falkowski, P. G., Fenchel, T., & Delong, E. F. (2008). The microbial engines that drive Earth's biogeochemical cycles. Science, 320(5879), 1034–1039. https://doi.org/10.1126/science.1153213
Feng, L., Wang, Y., Hou, X., Qin, B., Krumholz, L. R., & Jeppesen, E. (2024). Harmful algal blooms in inland waters. Nature Reviews Earth & Environment, 5(11), 631–644. https://doi.org/10.1038/s43017-024-00578-2
Filstrup, C. T., Heathcote, A. J., Kendall, D., & Downing, J. A. (2014). Phytoplankton taxonomic compositional shifts across nutrient and light gradients in temperate lakes. Inland Waters, 4(2), 234–242.
Graham, L. E., Graham, J. M., & Wilcox, L. W. (2009). Algae (2nd ed.). Pearson Benjamin Cummings.
Griffith, A. W., & Gobler, C. J. (2020). Harmful algal blooms: A climate change co-stressor in marine and freshwater ecosystems. Harmful Algae, 91, 101590. https://doi.org/10.1016/j.hal.2019.03.008
Hecky, R. E. (1993). The eutrophication of Lake Victoria. Verhandlungen der Internationale Vereinigung für Theoretische und Angewandte Limnologie, 25, 39–48.
Hoek, C. van den, Mann, D. G., & Jahns, H. M. (1995). Algae: An introduction to phycology. Cambridge University Press.
Kelly, M. G. (1998). Use of the trophic diatom index to monitor eutrophication in rivers. Water Research, 32(1), 236–242. https://doi.org/10.1016/S0043-1354(97)00019-5
Khalil, S., Mahnashi, M. H., Hussain, M., Zafar, N., Khan, F. S., Afzal, U., Shah, G. M., Niazi, U. M., Awais, M., & Irfan, M. (2021). Exploration and determination of algal role as bioindicator to evaluate water quality: Probing fresh water algae. Saudi Journal of Biological Sciences, 28(10), 5728–5737. https://doi.org/10.1016/j.sjbs.2021.06.004
Kim, J., Hwang, S., Park, J., Kim, H., & Cho, Y. (2026). Machine learning assessment of molecular trophic diatom index (mTDI) using planktonic eDNA for water quality in freshwater ecosystems. Journal of Phycology. https://doi.org/10.1080/02705060.2026.2633108
Kulaš, A., Gligora Udovič, M., Tapolczai, K., Žutinić, P., Orlić, S., & Levkov, Z. (2022). Diatom eDNA metabarcoding and morphological methods for bioassessment of karstic river. Science of the Total Environment, 829, 154536. https://doi.org/10.1016/j.scitotenv.2022.154536
Liu, M., Huang, Y., Hu, J., He, J., & Xiao, X. (2023). Algal community structure prediction by machine learning. Environmental Science and Ecotechnology, 14, 100233. https://doi.org/10.1016/j.ese.2022.100233
Lopez Barreto, B. N., Hestir, E. L., Lee, C. M., & Beutel, M. W. (2024). Satellite remote sensing: A tool to support harmful algal bloom monitoring and recreational health advisories in a California reservoir. GeoHealth, 8, e2023GH000941. https://doi.org/10.1029/2023GH000941
Makwana, K. (2022). Algae the bioindicator for sustainable environment: A review. Journal of Plant Science and Research, 9(2), 234.
Moustaka-Gouni, M., & Sommer, U. (2020). Phytoplankton bloom dynamics and species composition in relation to nutrient availability and grazing pressure. Hydrobiologia, 848, 1–15.
Nayak, S., Patnaik, A., & Mohanty, D. (2024). Algal population dynamics and nutrient correlations in tropical freshwater lakes. International Journal of Aquatic Biology, 12(1), 33–42.
Olivetti, D., Cicerelli, R., Martinez, J.-M., Almeida, T., Casari, R., Borges, H., & Roig, H. (2023). Comparing unmanned aerial multispectral and hyperspectral imagery for harmful algal bloom monitoring in artificial ponds used for fish farming. Drones, 7(7), 410. https://doi.org/10.3390/drones7070410
Paerl, H. W., & Paul, V. J. (2012). Climate change: Links to global expansion of harmful cyanobacteria. Water Research, 46(5), 1349–1363. https://doi.org/10.1016/j.watres.2011.08.002
Paerl, H. W., Xu, H., McCarthy, M. J., Zhu, G., Qin, B., Li, Y., & Gardner, W. S. (2011). Controlling harmful cyanobacterial blooms in a hyper-eutrophic lake (Lake Taihu, China): The need for a dual nutrient (N & P) management strategy. Water Research, 45(5), 1973–1983. https://doi.org/10.1016/j.watres.2010.09.018
Paerl, H. W., Havens, K. E., Peng, F., & Xu, H. (2023). Harmful cyanobacterial blooms: Biological traits, mechanisms, risks, and control strategies. Annual Review of Environment and Resources, 48, 123–147. https://doi.org/10.1146/annurev-environ-112320-081653
Passy, S. I. (2008). Continental diatom biodiversity in stream benthos declines as more nutrients become limiting. Proceedings of the National Academy of Sciences, 105(27), 9663–9667. https://doi.org/10.1073/pnas.0802542105
Paul, M. J., & Meyer, J. L. (2001). Streams in the urban landscape. Annual Review of Ecology and Systematics, 32, 333–365. https://doi.org/10.1146/annurev.ecolsys.32.081501.114040
Rabalais, N. N., Turner, R. E., Díaz, R. J., & Justić, D. (2010). Global change and eutrophication of coastal waters. Biogeosciences, 7(2), 585–619. https://doi.org/10.5194/bg-7-585-2010
Reid, A. J., Carlson, A. K., Creed, I. F., Eliason, E. J., Gell, P. A., Johnson, P. T. J., & Cooke, S. J. (2019). Emerging threats and persistent conservation challenges for freshwater biodiversity. Biological Reviews, 94(3), 849–873. https://doi.org/10.1111/brv.12480
Reynolds, C. S. (2006). The ecology of phytoplankton. Cambridge University Press. https://doi.org/10.1017/CBO9780511542145
Rosaldo-Benítez, V., Ayil-Chan, G. A., Labrin-Sotomayor, N., Valdez-Ojeda, R., & Peña-Ramírez, Y. J. (2024). Eukaryotic microalgae communities from tropical karstic freshwater lagoons in an anthropic disturbance gradient: Microscopic and metagenomic analysis. Microorganisms, 12(11), 2368. https://doi.org/10.3390/microorganisms12112368
Roy, S. S., Paul, W., Patra, D., Ojha, S. K., & Mishra, S. (2016). Algal biodiversity in selected freshwater aquatic bodies in Bhubaneswar, India. Journal of Advanced Microscopy Research, 2(2), 113–119.
Shubha, A., & Sreeja, P. (2019). Algal diversity and water pollution status of temple ponds in Kannur, Kerala. International Journal of Research and Analytical Reviews, 6(1), 889–896.
Swanson, J., Abdulrahman, D., & Dudycha, J. L. (2025). Light color and nutrients interact to determine freshwater algal community diversity and composition [Preprint]. bioRxiv. https://doi.org/10.1101/2025.02.27.640658
Wang, X., Zhang, J., & Zhang, W. (2023). Remote sensing for mapping algal blooms in freshwater lakes: A review. Environmental Science and Pollution Research, 30, 9583–9614. https://doi.org/10.1007/s11356-023-25230-2
Wetzel, R. G. (2001). Limnology: Lake and river ecosystems (3rd ed.). Academic Press.
Wu, N., Schmalz, B., & Fohrer, N. (2012). Development and testing of a phytoplankton index of biotic integrity (P-IBI) for a German lowland river. Ecological Indicators, 13, 158–167. https://doi.org/10.1016/j.ecolind.2011.06.001
Wu, N., Dong, X., Liu, Y., Wang, C., & Baattrup-Pedersen, A. (2017). Using river microalgae as indicators for freshwater biomonitoring: Review of published research and future directions. Ecological Indicators, 81, 124–131. https://doi.org/10.1016/j.ecolind.2017.05.066
Wu, Z., Gu, L., Xu, J., & Zhao, C. (2025). Eutrophication and warming drive algal community shifts: A palaeogenetic and multi-decadal monitoring study of experimental lakes. Environmental Microbiology, 27, e70226. https://doi.org/10.1111/1462-2920.70226
Yan, H., Yang, G., Zhou, Y., & Wang, Y. (2017). Algal bloom decomposition increases greenhouse gas emissions from eutrophic lakes. Environmental Science & Technology, 51(20), 11237–11246. https://doi.org/10.1021/acs.est.7b02237
Yang, J., Zhang, L., Mu, Y., Wang, J., Yu, H., & Zhang, X. (2023). Unsupervised biological integrity assessment by eDNA biomonitoring of multi-trophic aquatic taxa. Environment International, 175, 107950. https://doi.org/10.1016/j.envint.2023.107950
Zimmermann, J., Glöckner, G., Jahn, R., Enke, N., & Gemeinholzer, B. (2015). Metabarcoding vs. morphological identification to assess diatom diversity in environmental studies. Molecular Ecology Resources, 15(3), 526–542. https://doi.org/10.1111/1755-0998.12336

